Check species — check_species • EWCE

If species arguments are NULL, set default species.

check_species(
  genelistSpecies = NULL,
  sctSpecies = NULL,
  sctSpecies_origin = NULL,
  sctSpecies_origin_default = "mouse",
  verbose = TRUE
)

Arguments

genelistSpecies: Species that hits genes came from (no longer limited to just "mouse" and "human"). See list_species for all available species.
sctSpecies: Species that sct_data is currently formatted as (no longer limited to just "mouse" and "human"). See list_species for all available species.
sctSpecies_origin: Species that the sct_data originally came from, regardless of its current gene format (e.g. it was previously converted from mouse to human gene orthologs). This is used for computing an appropriate backgrund.
sctSpecies_origin_default: Default value for sctSpecies_origin.
verbose: Print messages.

List of corrected species names.