List all species that EWCE can convert genes from/to. Wrapper function for map_species.
list_species(verbose = TRUE)Print messages.
List of species EWCE can input/output genes as.
list_species()
#> Retrieving all organisms available in homologene.
#> Returning table with all species.
#> scientific_name taxonomy_id source id
#> 1 Mus musculus 10090 homologene mmusculus
#> 2 Rattus norvegicus 10116 homologene rnorvegicus
#> 3 Kluyveromyces lactis 28985 homologene klactis
#> 4 Magnaporthe oryzae 318829 homologene moryzae
#> 5 Eremothecium gossypii 33169 homologene egossypii
#> 6 Arabidopsis thaliana 3702 homologene athaliana
#> 7 Oryza sativa 4530 homologene osativa
#> 8 Schizosaccharomyces pombe 4896 homologene spombe
#> 9 Saccharomyces cerevisiae 4932 homologene scerevisiae
#> 10 Neurospora crassa 5141 homologene ncrassa
#> 11 Caenorhabditis elegans 6239 homologene celegans
#> 12 Anopheles gambiae 7165 homologene agambiae
#> 13 Drosophila melanogaster 7227 homologene dmelanogaster
#> 14 Danio rerio 7955 homologene drerio
#> 15 Xenopus (Silurana) tropicalis 8364 homologene xtropicalis
#> 16 Gallus gallus 9031 homologene ggallus
#> 17 Macaca mulatta 9544 homologene mmulatta
#> 18 Pan troglodytes 9598 homologene ptroglodytes
#> 19 Homo sapiens 9606 homologene hsapiens
#> 20 Canis lupus familiaris 9615 homologene clfamiliaris
#> 21 Bos taurus 9913 homologene btaurus
#> scientific_name_formatted
#> 1 mus musculus
#> 2 rattus norvegicus
#> 3 kluyveromyces lactis
#> 4 magnaporthe oryzae
#> 5 eremothecium gossypii
#> 6 arabidopsis thaliana
#> 7 oryza sativa
#> 8 schizosaccharomyces pombe
#> 9 saccharomyces cerevisiae
#> 10 neurospora crassa
#> 11 caenorhabditis elegans
#> 12 anopheles gambiae
#> 13 drosophila melanogaster
#> 14 danio rerio
#> 15 xenopus tropicalis
#> 16 gallus gallus
#> 17 macaca mulatta
#> 18 pan troglodytes
#> 19 homo sapiens
#> 20 canis lupus familiaris
#> 21 bos taurus