get_celltype_table

Source: R/get_celltype_table.r

get_celltype_table Generates a table that can be used for supplemenary tables of publications. The table lists how many cells are associated with each cell type, the level of annotation, and the dataset from which it was generated.

get_celltype_table(annot)

Arguments

annot

An annotation dataframe, which columns named 'level1class', 'level2class' and 'dataset_name'

Value

A dataframe with columns 'name', 'level', 'freq' and 'dataset_name'

Examples

# See PrepLDSC.Rmd for origin of merged_ALLCELLS$annot
cortex_mrna <- ewceData::cortex_mrna()
#> see ?ewceData and browseVignettes('ewceData') for documentation
#> loading from cache
cortex_mrna$annot$dataset_name <- "cortex_mrna"
celltype_table <- EWCE::get_celltype_table(cortex_mrna$annot)