ewce_plot generates plots of EWCE enrichment results
ewce_plot(
total_res,
mtc_method = "bonferroni",
q_threshold = 0.05,
ctd = NULL,
annotLevel = 1,
heights = c(0.3, 1),
make_dendro = FALSE,
verbose = TRUE
)Results data.frame generated using bootstrap_enrichment_test or ewce_expression_data functions. Multiple results tables can be merged into one results table, as long as the 'list' column is set to distinguish them. Multiple testing correction is then applied across all merged results.
Method to be used for multiple testing correction. Argument is passed to p.adjust (DEFAULT: "bonferroni).
Corrected significance threshold.
CellTypeDataset object. Should be provided so that the dendrogram can be taken from it and added to plots.
An integer indicating which level of ctd to
analyse (Default: 1).
The relative heights row in the grid. Will get repeated to match the dimensions of the grid. Passed to wrap_plots.
Add a dendrogram (requires ctd).
Print messages.
A named list containing versions of the ggplot
with and without the dendrogram. Note that cell type order on the x-axis is based on hierarchical clustering for both plots if make_dendro = TRUE.
## Bootstrap significance test,
## no control for transcript length or GC content
## Use pre-computed results to speed up example
total_res <- EWCE::example_bootstrap_results()$results
#> Loading precomputed example bootstrap results.
plt <- ewce_plot(total_res = total_res)